Tag: science communication (page 1 of 1)

Speaking Up Against Commercial Scientific Journals

My interview with Brazilian Society of Tropical Medicine (SBMT) on scientific publishing:

Commercial Science Journals: A Luxury Market?

Publicação: 10 de September de 2021

Most of the research produced in the world is still accessible to a few, while rivers of money drain from public safes to large publishing corporations

An article published in the science section in the blog The Wire, entitled “Why I Won’t Review or Write for Elsevier and Other Commercial Scientific Journals”  exposed the issues related to conflicts in the scientific articles market, which creates a [prestige] economy, allowing major journals to charge what they want, in addition to getting free labor from scientists eager to associate themselves with their brands as reviewers or editors. It is a market in which the taxpayer pays to have science produced, pays to have it published, and pays to subscribe to the journals that publish it. The system could easily be reformed if it weren’t for those scientists who insist on laying down rules so attached to the high-impact publications that have led them to the elite, and the new ones so obsessed with following the same path.

To learn more about the subject, the Communication Office of the Brazilian Society of Tropical Medicine (SBMT) interviewed Dr. TR Shankar Raman (also known as Sridhar), a writer that became a wildlife scientist. As a writer, he writes creative nonfiction and reflective essays on nature and conservation for newspapers, magazines, and blogs, as well as occasional book reviews and opinion or featured articles.

Scientific journals on a university library shelf (Courtesy Vmenkov, CC BY 3.0 via Wikimedia Commons)

Full interview:

SBMT: In your article, you mention racism, sexism and patronizing. What is your opinion about the ethics of peer review?

TRSR: Peer review is considered an essential part of science. It serves a gate-keeping function in scientific publication. Yet, principles, good practices, and ethics of peer reviewing are not often taught to researchers as an essential part of their academic training. Many of us first get to see peer reviews as comments on our first manuscripts and do our first peer reviews when invited by a journal or editor. Partly because of this and partly because scientists are humans who can be subject to the same biases and prejudices as other people, peer review often falls short of being the totally objective appraisal it is touted to be. Journals do provide generic guidelines to reviewers, but nevertheless, racist, sexist, or patronising reviews do get past editors. I have linked to articles about this on my blog post. Researchers and scientists, especially non English-speaking, from less developed countries and less well known institutions are often at the receiving end of such peer reviews. For examples, I know cases where reviewers have asked the author to include as co-author an experienced scientist from a western institution for their paper to be competitive or good enough; told authors from India who are native English speakers to get their paper read and vetted by a native English speaker (without pointing out any problems with English in their manuscript); and so on. Double-blind peer review tries to address some of those issues, but has its own problems. I personally think that transparent, signed peer reviews are the way forward as a norm.

SBMT: Are there ethical principles in peer reviewing scientific articles?

TRSR: Certainly. The Committee on Publication Ethics (COPE) guidelines could be taken as a benchmark of the kind of professionalism, integrity, honesty, and courtesy expected in peer reviews. Also, declaring competing interests and conflicts of interest is vital. Confidentiality during the review process is another important principle—no one wants their ideas stolen or plagiarised from an unpublished manuscript by an unscrupulous and anonymous reviewer.

SBMT: Do you believe there is corruption in the peer review process? If so, would this process be corrupting the scientific ethics of neutrality?

TRSR: As far as I know, fortunately, I myself have not suffered so far from corruption in the peer review process. From my limited experience, I would not be able to state how widespread it is and whether reviews and publication are used either as a form of patronage or to discriminate against rivals. To some extent, both probably occurs. But you mention neutrality. I feel that neutrality can be an aspiration for each of us when we do reviews, but it is probably more realistic to accept that none of us are truly neutral or unbiased. It is equally vital that as a reviewer, we reflect on and understand what our own biases or prejudices could be and how they may have affected our impressions of a paper and our reviews. Journals rarely ask reviewers to consider this or to provide an explicit statement based on reflection on their neutrality or prejudices—the focus is on the reviewed, rarely on the reviewer, although the latter is important, too.

SBMT: In your opinion, why are the most reputable journals all too expensive to publish or to access?

TRSR: First off, I want to contest the notion of what is a reputed journal. Too often it is based on Journal Impact Factor (JIF). There is now sufficient evidence to show that JIF is a very poor metric of quality in science. JIF is not some magic number: it’s just an index negotiated between journals and the company that provides the analytics calculated as a mean rather than a median and subject to all sorts of problems and biases. Besides its the quality of a paper that we are interested in and not some artificial metric of the journal itself. The JIF of a journal tells you nothing about the quality of any particular paper in that journal. In fact, there are more retractions, falsified data, and errors in these so-called high impact journals (for studies on this, see this recent post). Unfortunately, a false connection is drawn between quality and successful publication in such journals, and that is then used to decide on jobs and promotions in academia. As a result, a rush to publish in these journals has been induced, which is exploited by commercial scientific publishing companies like Elsevier, Wiley, Springer Nature and a few others who have cornered the market, so to speak, and charge exorbitant article processing charges. Based on the estimates from one recent study, it appears that these publishers are charging anywhere from 5 to more than 10 times the actual cost of publication of a typical scientific article. It is the prime irony of our times: scientists who pride themselves on their objectivity have been hoodwinked by a very subjective and flawed system into publishing in so-called reputed journals, while the commercial publishers laugh their way to the bank with their huge profits.

SBMT: Why are the “diamond/platinum” journals the least valued by editorial metrics and funding agencies?

TRSR: I have no idea why this should be so. It feels like the academic community has just painted itself into a corner. There are lots of excellent diamond open access journals. The journals published by Indian Academy of Sciences  are a good example (although they have a weird co-publishing arrangement with Springer Nature, the journals and papers can be freely accessed via the Academy website and there are no charges for authors to publish either). Of course, the number of papers that a diamond open access journal may be able to publish may be lower and many are in niche areas of science rather than multi-disciplinary in scope and hence their reach may be lower than what big-budget commercial journals can achieve with their resources. But this only means that diamond open access journals should be supported more to achieve better reach, not shift to commercial publishers. All public and philanthropic funding for science has everything to gain by supporting and mandating publication in diamond open access journals.

SBMT: How to design a policy in defense of Southern science through the promotion of “diamond/platinum” journals?

TRSR: As individuals, we can each take a stand, as I have tried to in my post—that I will not review for or publish in commercial journals, but will especially do so for diamond open access journals. Particularly, senior scientists and leaders in their fields must set an example by publishing, reviewing for, or accepting to be on the boards of diamond open access journals. But this will not go far unless we also collectively work to change overall policy. As a community, we must petition our academies, funders, and science administrators to change policies to give greater recognition to papers published in diamond open access journals. This can trigger a big change: especially if it begins to count towards jobs and promotions in academia. Impact factor should be trashed as outdated, harmful, and retrogressive. Recipients of public funds should be mandated to publish in diamond open access journals published by nonprofit scientific societies as this is the most cost-effective way to spend the available (limited) funds to achieve publication that is freely, openly, and widely accessible, while supporting and advancing science. Other initiatives such as Gold Open Access, self-archiving of submitted final versions, or pay-to-publish APC models are all half measures or discriminate and exclude large numbers of scientists around the world, who cannot pay the large fees involved. Policies should support membership fee support for scholars and new and tenured faculty to join learned academic societies that publish diamond open access journals so that the funds are kept within the community and to advance science rather than feed the profits of commercial companies.

SBMT: Would you like to explore further the concept of predatory science publishing?

TRSR: Predatory science publishing, I feel, is just a perversion of the normalisation of pay-to-publish models that we have allowed to happen and which most so-called reputed journals are using today. If money is taken out of the equation by recognising pay-to-publish models as disreputable for science, and by mandating publication in diamond open access journals, most predatory journals will disappear. I also have a different take on the idea of predation in scientific publishing. As I write in my post:

With exorbitant subscriptions, steep open access publication fees or paywalls for each article, companies such as Elsevier, Wiley, and Springer Nature are profiteering from an enterprise that generates knowledge which really belongs to all and which should be truly open and free for anyone in the world to access. To me, this is also a form of predatory publishing: unbridled corporate predation on captive academic prey.

SBMT: Is it correct to say that today science is better evaluated by the continent (the journal) than by the content (the article itself)?

TRSR: Yes. I often wonder whether scientists sitting in powerful positions, during proposal appraisals and job interviews, read the articles to assess a candidate and the quality of their work or just go by the fame and JIF of the journals their papers were published in. If as scientists we believe that it is the peer review process that is important, why not keep peer review and dispense with journals altogether? Find ways to have papers reviewed and accepted by peers, organise them by subject or theme, published with just a DOI and findable via a global database search? Some interesting new publishing models are already being implemented. The Peer Community In  model—where scientists come together in communities to openly review and recommend preprints that are freely and openly accessible—can be taken as equivalent to diamond open-access journal publication.

SBMT: Do you believe that there is a planned effort by rich countries to keep developing countries scientifically backward?

TRSR: I wouldn’t go so far as to say that. But there is certainly a blindness or an obtuseness towards the plight of scientists in developing countries and all lower and middle-income economies. A recent paper highlights the colonial roots of many of our present academic practices and issues a call for decolonising science. Decolonising access to scientific literature is a crucial part of that. Scientists in the west, in richer countries and in elite, well-endowed institutions in all countries, need to decolonise their minds and scientific practices to enable science to flourish globally and equitably.

SBMT: Would you nominate Alexandra Elbakyan, from Sci-Hub for the Nobel Prize. If so, how to start a global movement for this?

TRSR: I am not a fan of the Nobel Prizes, given they have their own biases and have failed to adequately acknowledge scientific contributions of women, for example. But given that its stated purpose is to award those who have conferred the greatest benefit to humankind, Alexandra Elbakyan certainly qualifies. I stand by what I wrote in my post:

Alexandra Elbakyan, a scholar and computer programmer who created and runs Sci-Hub, is probably the one person who has contributed more to global dissemination of science and access to scientific literature than any other person in human history.

Science academies from Brazil, India, and other countries, including western nations, could get together and nominate her, perhaps!

SBMT: Intellectual recognition of authors from tropical/poor countries in collaboration with authors from large institutions in rich countries is a big problem. Who has more value in a North-South collaborative scientific publication: one who conceived it, one who collected the data, one who analyzes it, or one who conducts the sophisticated experiments inaccessible to scientists from the Global South?

TRSR: This is again an issue that the paper I mentioned on decolonising science  goes into in better detail. I would simply urge everyone to read it. It sets out the problem and proposes changes in the way we do science: such as going past ‘parachute’ science to actively involve collaborators from the poorer countries as equal or better knowledge partners (not as tokenism), have reciprocal exchanges rather than one-way travel of students and scholars, and so on. Some journals have adopted policies that publications should include authors from the countries where the work was carried out in and so on, which is welcome, but there is more to do.

SBMT: Are science agencies in the Global South repeating the model of evaluating science based on editorial metrics and harming their own countries’ science and scientists?

TRSR: I don’t know about other countries, but in India, certainly. Journal Impact Factor is routinely used as a metric in assessments of scientists and their work. The Science and Engineering Research Board of India privileges publication in international journals over national journals and asks for journal impact factor to be provided as well. The UGC norms for academic performance of faculty actually scales their index by journal impact factor. This is very retrograde and harmful. Other aspects such as publication in diamond open access journals, making datasets also openly available, other forms of public engagement for science are all ignored in this system of evaluation. Instead of these flawed metrics, we need to move to new systems of evaluation that consider other aspects such as mentorship, diversity and inclusion, quality of work and so on. Alternative ways in which this can be accomplished have been proposed.

SBMT: Do you believe that the Global South remains colonized from a scientific and cultural point of view? Why do you think so?

TRSR: I think I have already answered this above with reference to the decolonising science paper.

SBMT: Aren’t scientists from the South themselves biased?

TRSR: As I mentioned before, all scientists are human and are likely to have their own biases. However, there is a huge asymmetry in power, privilege, and influence when compared to scientists in the Global North. The South is disadvantaged on many counts and that needs to be recognised and offset through thoughtful policies and actions.

SBMT: How can scientific journals from the Global South acquire international respectability?

TRSR: I don’t think I have the experience to offer an answer to that one. Perhaps it is something for all of us to deliberate on as a community. Bring editorial boards of different diamond open access journals published from the Global South together to start off the conversation. Good and practical ideas may emerge.

SBMT: How to increase South-South scientific collaboration? India and Brazil have a significant scientific production. Wouldn’t it be time to start an alliance between southern countries?

TRSR: Yes, certainly. As I mentioned above we have not done this as much as we perhaps can or should. For instance, by conducting joint conferences on tropical ecology, medicine, and conservation, for instance. Those conducted today tend to have few voices of scientists who are actually based in tropical countries. Famous names from institutions in the Global North predominate in the line-up of speakers: that should change, too.

SBMT: Tropical forests are very dangerously threatened. What is the role of scientists from the Global South?

TRSR: I think not just scientists, but people and communities from the Global South need to step forward to lead conservation efforts. Scientists should also acknowledge the traditional knowledge systems of indigenous people, recognise the roles they have played as stewards of their lands and forests in effecting conservation. The biggest threats are often from large-scale destructive development projects such as mining, roads, powerlines, large-scale green or renewable energy projects, dams and so on. Scientists have a key role not just to study these and document the wide-ranging impacts on ecology and society, indigenous people and their culture, but to share their findings widely with the public in all local languages to foster widespread public awareness and engagement with conservation. This can help combat the loss of tropical forests and also create enough momentum among citizens to push for political changes with the urgency and at the scale at which they are needed.

SBMT: Would you like to add anything?

TRSR: I think I’ve already said too much. There’s a lot to do and we should act as individuals, as part of our local scientific communities or societies, and also as larger collectives that push for changes in policy and practice globally.

Original Blog Post at View from Elephant Hills:

Why I will not review or write for Elsevier, Wiley, and other commercial scientific journals

Republished in The Wire—Science

Why I Won’t Review or Write for Elsevier and Other Commercial Scientific Journals

The Life of a Small Bone Hunter

My brief review of The Night Country (1971) by Loren Eiseley, a writer I greatly enjoy reading.

Loren Eiseley has this to say about nature writers such as Gilbert White, Richard Jefferies, and W. H. Hudson, but the words apply equally to himself:

Even though they were not discoverers in the objective sense, one feels at times that the great nature essayists had more individual perception than their scientific contemporaries. Theirs was a different contribution. They opened the minds of men by the sheer power of their thought. The world of nature, once seen through the eye of genius, is never seen in quite the same manner afterward. A dimension has been added, something that lies beyond the careful analyses of professional biology.”

Loren Eiseley (Courtesy: Wikipedia)

Eiseley’s writing is lyrical, deeply reflective, even melancholic. The essays in this book defy a simple description. Are they examples of nature writing? Memoir? Reflections on archaeology and anthropology? Ruminations on the external and internal worlds of the human? Essays on education and what it means to be a teacher? The essays are drawn from all this, gain synergy, become something larger and memorable. It is rare, I feel, to find emerging from the pen of a scientist, educator, and thinker, prose of such grace and humility.

Still, there are those who would complain of such writing, flay his ornamentation of ideas, rubbish his reflection as mysticism. It is difficult to imagine Eiseley himself being able to publish some of these essays in the literary and nature magazines of the present day. Where are the details? the editors may ask. The specifics, the hook, the motif, thread, conflict, and denouement? Or they might return his manuscript, advising him as one of his colleagues did, in all seriousness, to ‘explain himself’, perhaps ‘confess’ the state of his mind and internal world in the pages of a scientific journal. In Eiseley’s words again:

No one need object to the elucidation of scientific principles in clear, unornamental prose. What concerns us is the fact that there exists a new class of highly skilled barbarians—not representing the very great in science—who would confine men entirely to this diet.

Fortunately, Eiseley does not join the ranks of the barbarians, even as he admits in “Obituary of a bone hunter”, with due humility, that his own scientific career is marked by “no great discoveries”, that his is but a life “dedicated to the folly of doubt, the life of a small bone hunter.”

(Review originally written on 3 October 2013. You can read the book here.)

Conversation Biology: Eight Reasons I am a Silent Scientist

In a recent email exchange with a journalist I greatly respect, I wrote:

I am personally ashamed at how little we (as scientists) have done to either study carefully or explain the issues or even share our experiences in the public domain. The op-ed was just my small attempt to get some of those thoughts out for public discussion and criticism.

The op-ed I referred to was titled The Culling Fields. In it, I wrote about the recent notifications issued by the Central government and some states in India to list certain wildlife species—nilgai antelope, wild pig, and rhesus macaque—as ‘Vermin’ under the Wildlife Protection Act. The notifications were spurred by a belief that populations of these animals had boomed and were responsible for serious damage to crops in rural areas, coupled with a perceived lack of better management options for what has been labeled ‘human – wildlife conflict’ involving these species.

Moving species that earlier received protection in the Wildlife Act into its Schedule V (V as in five, for V as in Vermin!) allows anyone to kill those species in the respective states. Already, hundreds of animals have been killed by shooters, often from other states, in a manner that has no scientific basis, design, or monitoring. Videos also suggest a distressing lack of attention to basic humane norms to prevent animal suffering (see this IndiaTV video episode around 0:55 – 0:60 and 1:30). This is no scientific ‘culling’ or research-based wildlife population management. This desperate measure unleashed on unsuspecting animals is simply slaughter.

As a debate on culling emerged, I wrote about why the ongoing killing may not just be the wrong answer to the conservation issue, but a consequence of framing the wrong question. I do not intend to repeat those arguments, or what Sindhu Radhakrishna and I wrote in another piece, here. Nor do I intend to respond here to other articles or the few thoughtful demurring responses I received from people who had written in support of culling. Nor is this the place to discuss why widespread killing of wildlife in other countries, such as coyotes in the US, for example, makes little sense and is evidently less effective than non-lethal methods.

What I would like to do here is talk about another concern: the silence of scientists. Why have scientists in India—particularly conservation biologists and social scientists—for whom human – wildlife conflict is today a major area of research, hardly joined in the discussion to support or rebut or provide nuanced perspectives on culling as a solution? Leave alone participating in the debate, scientists are hardly even part of the backdrop.

As expected, the space is then taken up by well-meaning animal welfare groups and activists, who adopt a more immediate task of resistance, alongside the task of questioning. When activists in India queried the states where culling was allowed under the Right to Information Act (RTI) on whether the culls were based on scientific research studies, they learned that the orders were not based on any scientific studies. When the central government was asked, under RTI, how culling could be permitted without scientific studies, the activists were informed that no new research was required on the issue of conflict. Even with culling underway, questions asked on whether there was any monitoring of number of animals being culled, elicited only this response from the central Ministry of Environment, Forest, and Climate Change:

No such information available in the Ministry.

All this should have a sobering effect on the dozens of scientists and students I know across the country (and possibly many more that I don’t) who have spent months and years in the field studying human – wildlife interactions including conflicts. Some of them have spent years engaged in scientific research and efforts to reduce conflicts, often successfully, by working with local people and forest departments. My own work in this field has been relatively minuscule, but I have tried to keep up with the research and approaches to conflict mitigation because they have a direct bearing on wildlife conservation and human welfare. And yet, many of us have hardly spoken up in public to share our learnings to inform or influence policy, practice, and public opinion. One environmental journalist went a step further in analyzing this and wrote that perhaps wildlife conservation scientists don’t really care:

…while the animal welfare lobby has been quick to cry foul, there has been an ominous silence from the wildlife conservation community. This is where the wildlife scientists must step up to the challenge. The truth is that most wildlife biologists would rather spend their time doing pure science, that is studying species deep in the forest and learning new aspects of their behaviour. There is no charm in ‘managing’ human-animal problems. It’s also true that since most of the animals listed are not endangered, most conservation biologists have little or no concern in saving them.

I disagree with much of what that says and the way it is said: the pigeonholing of people who may have real concerns on animal welfare into a “lobby”, the oversight that many wildlife scientists now work outside reserves and in human-use landscapes, and the failure to note a growing scientific concern over common species as much as the rare and endangered. But what I do agree with is what the writer calls the “ominous silence from the wildlife conservation community” (leaving aside my personal opinion that those concerned with animal welfare are part of the same community).

Why are the scientists silent? And why is it important to ask this question? Not because science and scientists are infallible or represent the sole arbiters of truth—or other absurd claims on those lines. Not because I believe that science should form the bedrock of policy and governance—there are other aspects of society, politics, and asymmetries of power at play that are probably equally or more relevant. It is because one can envision a supportive role for reasoning—public reasoning—within the framework of any democracy. For citizens of a democracy facing various complex and shared problems that have no single or simple cause or solution, an atmosphere of open reasoning presents various possibilities, ideas, and information, and has the potential to cultivate collective—yet diverse and evolving—consciousness, attitudes, and actions.

I believe this is a discussion worth having because this is not the only issue in which the silence of scientists, including myself, rings louder than the gunshots.

So here are my “eight reasons I am a silent scientist”. These are reasons I have said out loud, just given myself, or heard expressed by colleagues. Instead of expanding on each, I am just going to toss this list out there with a brief line each, hoping that it will provoke you to go right down to the comments box and

  • add your voice and thoughts in the comments to say yay or nay or go take a f.f.a.a.r.d. (Vonnegut 1969) OR
  • add other reasons in your comments that I’m sure I’ve missed in this post.

Eight reasons why I am a silent scientist

1. My research does not address the relevant issues and places

This could be read as a polite way of saying I don’t really care or This doesn’t concern me as it ain’t in my backyard. Still, I wonder, if we study or teach population theory or political ecology or ungulate habitat use somewhere else, say, is it really irrelevant to the issue?

2. I don’t have enough data—my study is not good enough—to say anything yet

Don’t we love this one? Read it as you will, as humblebrag or a noble call to arms issued to one’s peers. But how many of us have not slipped this in at the end of our papers: we need more research?

3. I cannot make statements given the scientific uncertainties

All research is beset with some level of uncertainty. But isn’t dealing with, and reducing, uncertainty integral to science? Climate scientists have led by example on how to acknowledge uncertainty while communicating scientific findings and advances. But are we as conservation scientists content, instead, to say we need even more research until the level of uncertainty becomes acceptably low before we speak up?

4. All I have to say, I say in my peer-reviewed papers and technical reports

In other words, I’d rather not write or speak in public. As something I am culpable of and sympathise with in others, this raises the issue of access to our scientific findings. What have we done to make our research findings, data, publications more openly and publicly accessible?

5. I have spoken up—in government committees that I am a member in

Why bother with the messy and contentious public domain, when I can pick up the phone and call an influential person, a politician or government officer perhaps, or sit on a powerful committee and tell them that this is what science says must be done? (Of course, I asked for the minutes of the meeting to be made public, its not my fault that they haven’t been transparent about it.)

6. It is time to hear other voices, other world views

This one has a lot going for it, if it means actually shutting up in order to listen to other voices, especially of people affected by wildlife. Yet, complete silence on our part could be a lost opportunity for a conversation, for a dialogue or discourse, to share what we have done, learned, and what science, warts-and-all, has to reveal. This could, however, simply degenerate into Let them vent their problems, although they really don’t know what they are talking about, better listen to me instead.

7. This is not about science, it is about politics

A dirty business plagued by environmental illiteracy, corruption, and cronyism, isn’t that what politics and politicians are all about? Heck, if it was about inter-departmental wrangling, squabbling for funds and tenure, or seeking credit over other scientists and institutions, I am an expert on politics. But this is  real world politics in India’s villages, towns, and cities. So let me not say anything to reveal any more of my ignorance.

8. I am a scientist, not an advocate or, heaven forbid, an activist

The tension between science and advocacy persists in conservation biology, with at least one case of an editor-in-chief of a leading conservation journal being ousted due to her position on “removing advocacy statements from research papers”. Yet, if one reads advocacy as giving voice to the voiceless aren’t conservation scientists committed to conservation by default? And if action and resistance can be achieved through non-violence, can inaction perpetrate violence or perpetuate oppression? I don’t want to be an activist, but what does that make me: an inactivist?

What Aldo Leopold wrote in the Round River is  probably as true of science as it is of the ‘harmony with the land’ he wrote about:

We shall never achieve harmony with the land, anymore than we shall achieve absolute justice or liberty for people. In these higher aspirations the important thing is not to achieve but to strive.

Aldo Leopold, Round River

 References Cited

Vonnegut, K. (1969). Slaughterhouse-Five or the Children’s Crusade. New York: Bantam Doubleday Dell Publishing Group Inc.

This article appeared on my blog on the Coyotes Network on 16 September 2016 and was published in Scroll.in on 20 September 2016 under the title The silence of India’s wildlife scientists, including myself, rings louder than gunshots.